Publications | Heba Sailem

Heba Sailem, Ayaman Al-Haj-Zen (2020). Morphological landscape of endothelial cell networks reveals a functional role of glutamate receptors in angiogenesis.. Fingerprinting endothelial network architecture.

Avelino Javer, Jens Rittscher, Heba Sailem (2020). DeepScratch: Single-cell based topological metrics of scratch wound assays. Single-cell based topological metrics of scratch wound assays.

Andrew Torr, Doga Basaran, Julia Sero, Jens Rittscher, Heba Sailem (2020). DeepSplit: Segmentation of Microscopy Images Using Multi-Task Convolutional Networks. In MIUA.

Heba Sailem, Jens Rittscher, Lucas Pelkmans (2020). KCML: a machine-learning framework for inference of multi-scale gene functions from genetic perturbation screens. Molecular Systems Biology.

Heba Sailem, Andrew Zisserman, Jens Rittscher (2017). Discovery of Rare Phenotypes in Cellular Images Using Weakly Supervised Deep Learning. In ICCV.

Thomas Nketia, Heba Sailem, Gustavo Rohde, Raghu Machiraju, Jens Rittscher (2017). Analysis of live cell images: Methods, tools and opportunities. Methods.

Heba Sailem, Chris Bakal (2017). Studying mechanotransduction by image-omics. Genome Research.

Heba Sailem, Sam Cooper, Chris Bakal (2016). Visualizing quantitative microscopy data: History and challenges. Critical reviews in biochemistry and molecular biology.

Rachael Natrajan, Heba Sailem, Faraz K. Mardakheh, Mar Arias Garcia, Christopher J. Tape, Mitch Dowsett, Chris Bakal, Yinyin Yuan (2016). Microenvironmental Heterogeneity Parallels Breast Cancer Progression: A Histology– Genomic Integration Analysis. PLOS Medicine.

Faraz K. Mardakheh, Heba Sailem, Christopher J. Marshall, Chris Bakal (2015). Proteomics profiling of interactome dynamics by colocalisation analysis (COLA). Molecular BioSystems.

Heba Sailem, Julia Sero, Chris Bakal (2015). PhenoPlot. Nature Communication.

Heba Sailem, Julia Sero, Rico Chandra Ardy, Hannah Almuttaqi, Tongli Zhang, Chris Bakal (2015). Cell shape and the microenvironment regulate nuclear translocation of NF-kB in breast epithelial and tumor cells. Molecular Systems Biology.

Zheng Yin, Heba Sailem, Julia Sero, Rico Ardy, Stephen T. C. Wong, Chris Bakal (2014). How cells explore shape space: A quantitative statistical perspective of cellular morphogenesis. Bioessays.

Louise Evans, Heba Sailem, Patricia Pascual-Vargas, Chris Bakal (2013). Inferring signalling networks from images. Journal of Microscopy.

Zheng Yin, Amine Sadok, Heba Sailem, ..., Stephen T. C. Wong, Chris Bakal (2013). A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes. Nature Cell Biology.

Mar Arias Garcia, Miguel Sanchez Alvarez, Vicky Bousgouni, Julia Sero, Chris Bakal (2012). Differential RNAi screening provides insights into the rewiring of signalling networks during oxidative stress. Molecular BioSystems.